Statistics
| General | ||||
| Species Numbers | 12 | |||
| Map Numbers | 730 in total | |||
| Metabolic Maps | 390 | |||
| Gene Family Maps | 340 | |||
| Compound Numbers | 37117 in total | |||
| KEGG Compound | 16823 | |||
| KEGG Glycan | 10978 | |||
| KEGG Drug | 9316 | |||
| Reaction Numbers | 23958 in total | |||
| KEGG Reaction | 8439 | |||
| Others | 15519 | |||
| Genes | ||||
| SGN unigenes | ||||
| Antirrhinum majus v1 (snapdragon) | 2740 on the maps, 3103 in the database | |||
| Capsicum annuum v1 | 2106 on the maps, 2321 in the database | |||
| Coffea arabica v1 | 2120 on the maps, 2381 in the database | |||
| Coffea canephora v3 | 2506 on the maps, 2846 in the database | |||
| Ipomoea batatas v1 | 1567 on the maps, 1714 in the database | |||
| Nicotiana benthamiana v1 | 2320 on the maps, 2565 in the database | |||
| Nicotiana sylvestris v1 | 1103 on the maps, 1222 in the database | |||
| Nicotiana tabacum v2 | 8533 on the maps, 9672 in the database | |||
| Petunia hybrida v1 | 1054 on the maps, 1144 in the database | |||
| Solanum lycopersicum 2006 v2 | 6892 on the maps, 7834 in the database | |||
| Solanum lycopersicum 2009-08-05 | 9529 on the maps, 10633 in the database | |||
| Solanum lycopersicum ITAG2.3 | 6214 on the maps, 34727 in the database | |||
| Solanum melongena v2 | 324 on the maps, 347 in the database | |||
| Solanum tuberosum v4 | 5115 on the maps, 5865 in the database | |||
| Correlation Data (gene-to-gene) | ||||
| Solanum lycopersicum | Sly: MiBASE (50 Affy chips) MR <= 100 and PCC >= 0.6 | |||
| PCC: Pearson's Correlation Coefficient MR: Mutual Rank |
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| Gene and Probe Infromation | ||||
| Species | Gene ID | Probe ID / Sample | Array Type | Abbr. |
| Antirrhinum majus v1 | SGN unigene ID | SGN unigene ID / SGN-U388244 | SGN-Uni Ama 1 | Ama1 |
| Capsicum annuum v1 | SGN unigene ID | SGN unigene ID / SGN-U196015 | SGN-Uni Can1 | Can1 |
| Coffea arabica v1 | SGN unigene ID | SGN unigene ID / SGN-U604850 | SGN-Uni Coa1 | Coa1 |
| Coffea canephora v3 | SGN unigene ID | SGN unigene ID / SGN-U612987 | SGN-Uni Coc1 | Coc3 |
| Ipomoea batatas v1 | SGN unigene ID | SGN unigene ID / SGN-U406937 | SGN-Uni Iba1 | Iba1 |
| Nicotiana benthamiana v1 | SGN unigene ID | SGN unigene ID / SGN-U505701 | SGN-Uni Nbe1 | Nbe1 |
| Nicotiana sylvestris v1 | SGN unigene ID | SGN unigene ID / SGN-U414799 | SGN-Uni Nsy1 | Nsy1 |
| Nicotiana tabacum v2 | SGN unigene ID | SGN unigene ID / SGN-U421099 | SGN-Uni Nta2 | Nta2 |
| Petunia hybrida v1 | SGN unigene ID | SGN unigene ID / SGN-U207410 | SGN-Uni Phy1 | Phy1 |
| Solanum lycopersicum 2006 v2 | SGN unigene ID | SGN unigene ID / SGN-U562593 | SGN-Uni Sly2 | Sly2 |
| Solanum lycopersicum 2009-08-05 | SGN ID |
SGN ID / Solanum_lycopersicum_transcripts_assembly_contig1 | SGN-Uni Sly | Sly |
| Solanum lycopersicum ITAG2.3 | ITAG2.3 ID |
ITAG2.3 ID / Solyc10g079420.1.1 | ITAG2.3 ID | Sly3 |
| Solanum melongena v2 | SGN unigene ID | SGN unigene ID / SGN-U205569 |
SGN-Uni Sme2 | Sme2 |
| Solanum tuberosum v4 | SGN unigene ID | SGN unigene ID / SGN-U268052 |
SGN-Uni Stu4 | Stu4 |
The gene information file and probe information file for each species are available from "Download" function after log-in. Check on "Information" for Data Type and press "Search" button. Then all the information files used in the KaPPA-View4 system will be listed. Please see the files named Abbr_geneInfo_DATE.csv for gene information (File Type: Gene) and Abbr_featureGene_DATE.csv for probe information (File Type: Feature).Quantitative gene expression data should be described with the proper probe IDs and should be uploaded as corresponding Array Type. |
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